Articles
Bell, T. W., Allen, J. G., Cavanaugh, K. C., Siegel, D. A. (2020). Three decades of variability in California's giant kelp forests from the Landsat satellites. Remote Sensing of Environment. 238:110811. DOI: 10.1016/j.rse.2018.06.039
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Bell, T. W., Nidzieko, N. J., Siegel, D. A., Miller, R. J., Cavanaugh, K. C., Nelson, N. B., Reed, D. C., Fedorov, D., Moran, C., Snyder, J. N., et al. (2020). The Utility of Satellites and Autonomous Remote Sensing Platforms for Monitoring Offshore Aquaculture Farms: A Case Study for Canopy Forming Kelps. Frontiers in Marine Science. 7. DOI: 10.3389/fmars.2020.520223
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Dressler, T. L., Lafferty, K. D., Jerde, C. L., Dudley, T. (2020). Looking where it's hard to see: a case study documenting rare. Journal of Fish Biology. 97:572--576. DOI: 10.1111/jfb.14401
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Ezzat, L., Lamy, T., Maher, R. L., Munsterman, K. S., Landfield, K. M., Schmeltzer, E. R., Clements, C. S., Thurber, R. L. V., Burkepile, D. E. (2020). Parrotfish predation drives distinct microbial communities in reef-building corals. Animal Microbiome. 2. DOI: 10.1186/s42523-020-0024-0
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Goddard, J. H. R., Goddard, W. M., Goddard, Z. E. (2020). Benthic Heterobranch Sea Slugs (Gastropoda: Heterobranchia) from Santa Barbara County, California. I. Review of the literature, and Naples Point, 2002--2019. Proceedings of the California Academy of Sciences Series. 66:27--298.
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Lafferty, K. D., Garcia-Vedrenne, A. E., McLaughlin, J. P., Childress, J. N., Morse, M. F., Jerde, C. L. (2020). At Palmyra Atoll, the fish-community environmental DNA signal changes across habitats but not with tides. Journal of Fish Biology. DOI: 10.1111/jfb.14403
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Lamy, T., Koenigs, C., Holbrook, S. J., Miller, R. J., Stier, A. C., Reed, D. C. (2020). Foundation species promote community stability by increasing diversity in a giant kelp forest. Ecology. 101. DOI: 10.1002/ecy.2987
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McElroy, M. E., Dressler, T. L., Titcomb, G. C., Wilson, E. A., Deiner, K., Dudley, T. L., Eliason, E. J., Evans, N. T., Gaines, S. D., Lafferty, K. D., et al. (2020). Calibrating Environmental DNA Metabarcoding to Conventional Surveys for Measuring Fish Species Richness. Frontiers in Ecology and Evolution. 8. DOI: 10.3389/fevo.2020.00276
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Meyer-Gutbrod, E. L., Love, M. S., Schroeder, D. M., Claisse, J. T., Kui, L., Miller, R. J. (2020). Forecasting the legacy of offshore oil and gas platforms on fish community structure and productivity. Ecological Applications. 30. DOI: 10.1002/eap.2185
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Miller, R. J., Adeleye, A. S., Page, H. M., Kui, L., Lenihan, H. S., Keller, A. A. (2020). Nano and traditional copper and zinc antifouling coatings: metal release and impact on marine sessile invertebrate communities. Journal of Nanoparticle Research. 22. DOI: 10.1007/s11051-020-04875-x
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Rassweiler, A., Dubel, A. K., Hernan, G., Kushner, D. J., Caselle, J. E., Sprague, J. L., Kui, L., Lamy, T., Lester, S. E., Miller, R. J., et al. (2020). Roving Divers Surveying Fish in Fixed Areas Capture Similar Patterns in Biogeography but Different Estimates of Density When Compared With Belt Transects. Frontiers in Marine Science. 7. DOI: 10.3389/fmars.2020.00272
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Sepulveda, A. J., Nelson, N. M., Jerde, C. L., Luikart, G. (2020). Are Environmental DNA Methods Ready for Aquatic Invasive Species Management?. Trends in Ecology &Evolution. 35:668--678. DOI: 10.1016/j.tree.2020.03.011
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Snyder, J. N., Bell, T. W., Siegel, D. A., Nidzieko, N. J., Cavanaugh, K. C. (2020). Sea Surface Temperature Imagery Elucidates Spatiotemporal Nutrient Patterns for Offshore Kelp Aquaculture Siting in the Southern California Bight. Frontiers in Marine Science. 7. DOI: 10.3389/fmars.2020.00022
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Turner, T. L. (2020). Four new Scopalina from Southern California: the first Scopalinida (Porifera:Demospongiae) from the Eastern Pacific. bioRxiv. DOI: 10.1101/2020.08.11.246710
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Turner, T. L. (2020). The marine sponge Hymeniacidon perlevis is a globally-distributed invasive species. Aquatic Invasions. DOI: 10.1101/2020.02.13.948000
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Turner, T. L. (2020). The order Tethyida (Porifera) in California: taxonomy, systematics, and the first member of the family Hemiasterellidae in the Eastern Pacific. bioRxiv. DOI: 10.1101/2020.04.05.026518
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Catlett, D., Matson, P. G., Carlson, C. A., Wilbanks, E. G., Siegel, D. A., Iglesias-Rodriguez, M. D. (2019). Evaluation of accuracy and precision in an amplicon sequencing workflow for marine protist communities. Limnology and Oceanography: Methods. 18:20--40. DOI: 10.1002/lom3.10343
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Claisse, J. T., Love, M. S., Meyer-Gutbrod, E. L., Williams, C. M., I I, D. J. P. (2019). Fishes with high reproductive output potential on California offshore oil and gas platforms. Bulletin of Marine Science. 95:515--534. DOI: 10.5343/bms.2019.0016
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Ezzat, L., Lamy, T., Maher, R., Munsterman, K., Landfield, K., Schmeltzer, E., Gaulke, C., Burkepile, D., Thurber, R. V. (2019). Surgeonfish feces increase microbial opportunism in reef-building corals. Marine Ecology Progress Series. 631:81--97. DOI: 10.3354/meps13119
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Gries, C., Servilla, M., O'Brien, M., Vanderbilt, K., Smith, C., Costa, D., Grossman-Clarke, S. (2019). Achieving FAIR Data Principles at the Environmental Data Initiative,the US-LTER Data Repository. Biodiversity Information Science and Standards. 3. DOI: 10.3897/biss.3.37047
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Guazzo, R., Schulman-Janiger, A., Smith, M., Barlow, J., D'Spain, G., Rimington, D., Hildebrand, J. (2019). Gray whale migration patterns through the Southern California Bight from multi-year visual and acoustic monitoring. Marine Ecology Progress Series. 625:181--203. DOI: 10.3354/meps12989
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Hildebrand, J. (2019). The characteristics of song: An overview for marine mammals. The Journal of the Acoustical Society of America. 145:1919--1919. DOI: 10.1121/1.5101968
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James, A. K., Kelly, L. W., Nelson, C. E., Wilbanks, E. G., Carlson, C. A. (2019). Elevated pCO2 alters marine heterotrophic bacterial community composition and metabolic potential in response to a pulse of phytoplankton organic matter. Environmental Microbiology. 21:541--556. DOI: 10.1111/1462-2920.14484
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Jerde, C. L. (2019). Can we manage fisheries with the inherent uncertainty from eDNA?. Journal of Fish Biology. DOI: 10.1111/jfb.14218
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Kröncke, I., Neumann, H., Dippner, J. W., Holbrook, S., Lamy, T., Miller, R., Padedda, B. M., Pulina, S., Reed, D. C., Reinikainen, M., et al. (2019). Comparison of biological and ecological long-term trends related to northern hemisphere climate in different marine ecosystems. Nature Conservation. 34:311--341. DOI: 10.3897/natureconservation.34.30209
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Lamy, T., Wang, S., Renard, D., Lafferty, K. D., Reed, D. C., Miller, R. J. (2019). Species insurance trumps spatial insurance in stabilizing biomass of a marine macroalgal metacommunity. Ecology. 100. DOI: 10.1002/ecy.2719
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Love, M. S. (2019). Fishes and invertebrates of oil and gas platforms off California: an introduction and summary. Bulletin of Marine Science. 95:463--476. DOI: 10.5343/bms.2019.0043
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Love, M. S., Claisse, J. T., Roeper, A. (2019). An analysis of the fish assemblages around 23 oil and gas platforms off California with comparisons with natural habitats. Bulletin of Marine Science. 95:477--514. DOI: 10.5343/bms.2018.0061
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Love, M. S., Kui, L., Claisse, J. T. (2019). The role of jacket complexity in structuring fish assemblages in the midwaters of two California oil and gas platforms. Bulletin of Marine Science. 95:597--616. DOI: 10.5343/bms.2017.1131
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Love, M. S., Nishimoto, M. M., Snook, L., Kui, L. (2019). An analysis of the sessile, structure-forming invertebrates living on California oil and gas platforms. Bulletin of Marine Science. 95:583--596. DOI: 10.5343/bms.2017.1042
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Matson, P. G., Washburn, L., Fields, E. A., Gotschalk, C., Ladd, T. M., Siegel, D. A., Welch, Z. S., Iglesias-Rodriguez, M. D. (2019). Formation, Development, and Propagation of a Rare Coastal Coccolithophore Bloom. Journal of Geophysical Research: Oceans. 124:3298--3316. DOI: 10.1029/2019jc015072
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Meyer-Gutbrod, E. L., Kui, L., Nishimoto, M. M., Love, M. S., Schroeder, D. M., Miller, R. J. (2019). Fish densities associated with structural elements of oil and gas platforms in southern California. Bulletin of Marine Science. 95:639--656. DOI: 10.5343/bms.2018.0078
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Meyer-Gutbrod, E. L., Love, M. S., Claisse, J. T., Page, H. M., Schroeder, D. M., Miller, R. J. (2019). Decommissioning impacts on biotic assemblages associated with shell mounds beneath southern California offshore oil and gas platforms. Bulletin of Marine Science. 95:683--702. DOI: 10.5343/bms.2018.0077
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Michaud, K. M., Emery, K. A., Dugan, J. E., Hubbard, D. M., Miller, R. J. (2019). Wrack resource use by intertidal consumers on sandy beaches. Estuarine, Coastal and Shelf Science. 221:66--71. DOI: 10.1016/j.ecss.2019.03.014
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Nishimoto, M. M., Simons, R. D., Love, M. S. (2019). Offshore oil production platforms as potential sources of larvae to coastal shelf regions off southern California. Bulletin of Marine Science. 95:535--558. DOI: 10.5343/bms.2019.0033
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Nishimoto, M. M., Washburn, L., Love, M. S., Schroeder, D. M., Emery, B. M., Kui, L. (2019). Timing of juvenile fish settlement at offshore oil platforms coincides with water mass advection into the Santa Barbara Channel, California. Bulletin of Marine Science. 95:559--582. DOI: 10.5343/bms.2018.0068
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Page, H. M., Simons, R. D., Zaleski, S. F., Miller, R. J., Dugan, J. E., Schroeder, D. M., Doheny, B., Goddard, J. H. (2019). Distribution and potential larval connectivity of the non-native Watersipora (Bryozoa) among harbors, offshore oil platforms, and natural reefs. Aquatic Invasions. 14:615--637. DOI: 10.3391/ai.2019.14.4.04
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Page, H. M., Zaleski, S. F., Miller, R. J., Dugan, J. E., Schroeder, D. M., Doheny, B. (2019). Regional patterns in shallow water invertebrate assemblages on offshore oil and gas platforms along the Pacific continental shelf. Bulletin of Marine Science. 95:617--638. DOI: 10.5343/bms.2017.1155
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Sainz, J. F., Lorenzo, E. D., Bell, T. W., Gaines, S., Lenihan, H., Miller, R. J. (2019). Spatial Planning of Marine Aquaculture Under Climate Decadal Variability: A Case Study for Mussel Farms in Southern California. Frontiers in Marine Science. 6. DOI: 10.3389/fmars.2019.00253
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Wang, S., Lamy, T., Hallett, L. M., Loreau, M. (2019). Stability and synchrony across ecological hierarchies in heterogeneous metacommunities: linking theory to data. Ecography. 42:1200--1211. DOI: 10.1111/ecog.04290
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Yorke, C. E., Page, H. M., Miller, R. J. (2019). Sea urchins mediate the availability of kelp detritus to benthic consumers. Proceedings of the Royal Society B: Biological Sciences. 286:20190846. DOI: 10.1098/rspb.2019.0846
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Yorke, C., Hanns, B., Shears, N., Page, H., Miller, R. (2019). Living kelp versus plankton as food sources for suspension feeders. Marine Ecology Progress Series. 614:21--33. DOI: 10.3354/meps12906
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Castorani, M. C. N., Reed, D. C., Miller, R. J. (2018). Loss of foundation species: disturbance frequency outweighs severity in structuring kelp forest communities. Ecology. 99:2442--2454. DOI: 10.1002/ecy.2485
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Catlett, D., Siegel, D. A. (2018). Phytoplankton Pigment Communities Can be Modeled Using Unique Relationships With Spectral Absorption Signatures in a Dynamic Coastal Environment. Journal of Geophysical Research: Oceans. 123:246--264. DOI: 10.1002/2017jc013195
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Lafferty, K. D., Benesh, K. C., Mahon, A. R., Jerde, C. L., Lowe, C. G. (2018). Detecting Southern California's White Sharks With Environmental DNA. Frontiers in Marine Science. 5. DOI: 10.3389/fmars.2018.00355
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Lenihan, H. S., Peterson, C. H., Miller, R. J., Kayal, M., Potoski, M. (2018). Biotic disturbance mitigates effects of multiple stressors in a marine benthic community. Ecosphere. 9:e02314. DOI: 10.1002/ecs2.2314
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Love, M. S., McCrea, M., Kui, L. (2018). Aspects of the Life Histories of Pinkrose Rockfish (Sebastes simulator) and Swordspine Rockfish (Sebastes ensifer) with Notes on the Subgenus Sebastomus. Bulletin, Southern California Academy of Sciences. 117:64--76. DOI: 10.3160/soca-117-01-64-76.1
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Miller, R. J., Lafferty, K. D., Lamy, T., Kui, L., Rassweiler, A., Reed, D. C. (2018). Giant kelp, Macrocystis pyrifera, increases faunal diversity through physical engineering. Proceedings of the Royal Society B: Biological Sciences. 285:20172571. DOI: 10.1098/rspb.2017.2571
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Muller-Karger, F. E., Hestir, E., Ade, C., Turpie, K., Roberts, D. A., Siegel, D., Miller, R. J., Humm, D., Izenberg, N., Keller, M., et al. (2018). Satellite sensor requirements for monitoring essential biodiversity variables of coastal ecosystems. Ecological Applications. 28:749--760. DOI: 10.1002/eap.1682
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Muller-Karger, F. E., Miloslavich, P., Bax, N. J., Simmons, S., Costello, M. J., Pinto, I. S., Canonico, G., Turner, W., Gill, M., Montes, E., et al. (2018). Advancing Marine Biological Observations and Data Requirements of the Complementary Essential Ocean Variables (EOVs) and Essential Biodiversity Variables (EBVs) Frameworks. Frontiers in Marine Science. 5. DOI: 10.3389/fmars.2018.00211
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Smith, J. M., Brzezinski, M. A., Melack, J. M., Miller, R. J., Reed, D. C. (2018). Urea as a source of nitrogen to giant kelp (Macrocystis pyrifera). Limnology and Oceanography Letters. 3:365--373. DOI: 10.1002/lol2.10088
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Varga, L., Wiggins, S., Hildebrand, J. (2018). Behavior of singing fin whales Balaenoptera physalus tracked acoustically offshore of Southern California. Endangered Species Research. 35:113--124. DOI: 10.3354/esr00881
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Viola, S. M., Page, H. M., Zaleski, S. F., Miller, R. J., Doheny, B., Dugan, J. E., Schroeder, D. M., Schroeter, S. C. (2018). Anthropogenic disturbance facilitates a non-native species on offshore oil platforms. Journal of Applied Ecology. 55:1583--1593. DOI: 10.1111/1365-2664.13104
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Wear, E. K., Wilbanks, E. G., Nelson, C. E., Carlson, C. A. (2018). Primer selection impacts specific population abundances but not community dynamics in a monthly time-series 16S {rRNA} gene amplicon analysis of coastal marine bacterioplankton. Environmental Microbiology. 20:2709--2726. DOI: 10.1111/1462-2920.14091
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Bell, T. W., Reed, D. C., Nelson, N. B., Siegel, D. A. (2017). Regional patterns of physiological condition determine giant kelp net primary production dynamics. Limnology and Oceanography. 63:472--483. DOI: 10.1002/lno.10753
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Fedorov, D. V., Kvilekval, K. G., Doheny, B., Sampson, S., Miller, R. J., Manjunath, B. S. (2017). Deep learning for all: managing and analyzing underwater and remote sensing imagery on the web using BisQue. UC Santa Barbara Previously Published Works. .
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Guerra, A. S., Madigan, D. J., Love, M. S., McCauley, D. J. (2017). The worth of giants: The consumptive and non-consumptive use value of the giant sea bass (Stereolepis gigas). Aquatic Conservation: Marine and Freshwater Ecosystems. 28:296--304. DOI: 10.1002/aqc.2837
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Lamy, T., Laroche, F., David, P., Massol, F., Jarne, P. (2017). The contribution of species-genetic diversity correlations to the understanding of community assembly rules. Oikos. 126:759--771. DOI: 10.1111/oik.03997
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Lamy, T., Reed, D. C., Rassweiler, A., Siegel, D. A., Kui, L., Bell, T. W., Simons, R. D., Miller, R. J. (2017). Scale-specific drivers of kelp forest communities. Oecologia. 186:217--233. DOI: 10.1007/s00442-017-3994-1
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Reed, D., Washburn, L., Rassweiler, A., Miller, R., Bell, T., Harrer, S. (2016). Extreme warming challenges sentinel status of kelp forests as indicators of climate change. Nature Communications. 7. DOI: 10.1038/ncomms13757
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Bell, T. W., Cavanaugh, K. C., Reed, D. C., Siegel, D. A. (2015). Geographical variability in the controls of giant kelp biomass dynamics. Journal of Biogeography. 42:2010--2021. DOI: 10.1111/jbi.12550
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Bell, T. W., Cavanaugh, K. C., Siegel, D. A. (2015). Remote monitoring of giant kelp biomass and physiological condition: An evaluation of the potential for the Hyperspectral Infrared Imager (HyspIRI) mission. Remote Sensing of Environment. 167:218--228. DOI: 10.1016/j.rse.2015.05.003
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Castorani, M. C. N., Reed, D. C., Alberto, F., Bell, T. W., Simons, R. D., Cavanaugh, K. C., Siegel, D. A., Raimondi, P. T. (2015). Connectivity structures local population dynamics: a long-term empirical test in a large metapopulation system. Ecology. 96:3141--3152. DOI: 10.1890/15-0283.1
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Johansson, M. L., Alberto, F., Reed, D. C., Raimondi, P. T., Coelho, N. C., Young, M. A., Drake, P. T., Edwards, C. A., Cavanaugh, K., Assis, J., et al. (2015). Seascape drivers {ofMacrocystis} pyriferapopulation genetic structure in the northeast Pacific. Molecular Ecology. 24:4866--4885. DOI: 10.1111/mec.13371
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Koenigs, C., Miller, R., Page, H. (2015). Top predators rely on carbon derived from giant kelp Macrocystis pyrifera. Marine Ecology Progress Series. 537:1--8. DOI: 10.3354/meps11467
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Miller, R. J., Page, H. M., Reed, D. C. (2015). Trophic versus structural effects of a marine foundation species, giant kelp (Macrocystis pyrifera). Oecologia. 179:1199--1209. DOI: 10.1007/s00442-015-3441-0
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Wear, E. K., Carlson, C. A., James, A. K., Brzezinski, M. A., Windecker, L. A., Nelson, C. E. (2015). Synchronous shifts in dissolved organic carbon bioavailability and bacterial community responses over the course of an upwelling-driven phytoplankton bloom. Limnology and Oceanography. 60:657--677. DOI: 10.1002/lno.10042
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Rahimi, A. M., Miller, R. J., Fedorov, D. V., Sunderrajan, S., Doheny, B. M., Page, H. M., Manjunath, B. S. (2014). Marine Biodiversity Classification Using Dropout Regularization. 2014 ICPR Workshop on Computer Vision for Analysis of Underwater Imagery. DOI: 10.1109/cvaui.2014.17
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Books & Charpters
Love, M. S., Passarelli, J. K. Miller and Lea's guide to the coastal marine fishes of California. (2020)..
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